PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P19510_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 191aa    MW: 21168 Da    PI: 7.0983
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P19510_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.51e-0784124954
                             HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              r RR+ri +++  L++l+P       +K++  ++L +A++Y+k L
  GSMUA_Achr11P19510_001  84 ARLRRERISERIRVLQRLVPGG-----TKMDTTSMLDEAIRYVKFL 124
                             699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.55775124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.15E-1480138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-1381135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-1281130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-585124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.74E-697129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MGSQFLSNYI PLELPFHAHI HPPSFPRRGM EGDHEAEEEE ALGAVKEMMY RIAAMQPVDI  60
DPSTIKKPRR RNVRISDDPQ SVAARLRRER ISERIRVLQR LVPGGTKMDT TSMLDEAIRY  120
VKFLKRQVQE LQASPQSHAV HVGAVVDGNP VAGAEWSHAS SPSSSSSAMG APPPPVLEFG  180
FDEQGAHHPV H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18489RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0650181e-84BT065018.1 Zea mays full-length cDNA clone ZM_BFc0135I21 mRNA, complete cds.
GenBankEU9741971e-84EU974197.1 Zea mays clone 442660 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384290.11e-138PREDICTED: transcription factor IND-like
SwissprotO813137e-44IND_ARATH; Transcription factor IND
TrEMBLM0RTN11e-138M0RTN1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P19510_0011e-138(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90513246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.14e-37bHLH family protein